Bioinformatics core facility
- Prosjektnummer
- 2011010
- Ansvarlig person
- Eivind Hovig
- Institusjon
- Oslo universitetssykehus HF
- Prosjektkategori
- Regional teknologisk kjernefasilitet
- Helsekategori
- Forskningsaktivitet
Identifying pathogenic processes by integrating microarray data with prior knowledge.
BMC Bioinformatics 2014;15():115. Epub 2014 apr 24
PMID: 24758699
Hypoxia-reoxygenation affects whole-genome expression in the newborn eye.
Invest Ophthalmol Vis Sci 2014 Mar;55(3):1393-401. Epub 2014 mar 10
PMID: 24458145
Expression of bone morphogenetic protein 4 and its receptors in the remodeling heart.
Life Sci 2014 Mar 3;97(2):145-54. Epub 2014 jan 4
PMID: 24398041
Transcriptome profiling of the newborn mouse brain after hypoxia-reoxygenation: hyperoxic reoxygenation induces inflammatory and energy failure responsive genes.
Pediatr Res 2014 Apr;75(4):517-26. Epub 2013 des 27
PMID: 24375083
Early-onset Crohn's disease and autoimmunity associated with a variant in CTLA-4.
Gut 2015 Dec;64(12):1889-97. Epub 2014 nov 3
PMID: 25367873
Effects of conserved residues and naturally occurring mutations on Mycobacterium tuberculosis RecG helicase activity.
Microbiology 2014 Jan;160(Pt 1):217-27. Epub 2013 okt 29
PMID: 24169816
Mutation G805R in the transmembrane domain of the LDL receptor gene causes familial hypercholesterolemia by inducing ectodomain cleavage of the LDL receptor in the endoplasmic reticulum.
FEBS Open Bio 2014;4():321-7. Epub 2014 mar 19
PMID: 24918045
Performance comparison of four exome capture systems for deep sequencing.
BMC Genomics 2014;15():449. Epub 2014 jun 9
PMID: 24912484
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization.
Bioinformatics 2014 Jun 1;30(11):1620-2. Epub 2014 feb 7
PMID: 24511080
Differential protein network analysis of the immune cell lineage.
Biomed Res Int 2014;2014():363408. Epub 2014 sep 21
PMID: 25309909
Evolutionary paths of the cAMP-dependent protein kinase (PKA) catalytic subunits.
PLoS One 2013;8(4):e60935. Epub 2013 apr 12
PMID: 23593352
Genome-wide association analysis in primary sclerosing cholangitis and ulcerative colitis identifies risk loci at GPR35 and TCF4.
Hepatology 2013 Sep;58(3):1074-83. Epub 2013 jan 17
PMID: 22821403
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer.
PLoS One 2013;8(6):e66165. Epub 2013 jun 18
PMID: 23824282
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements.
Nucleic Acids Res 2013 May 1;41(10):5164-74. Epub 2013 apr 9
PMID: 23571755
Predicting physical interactions between protein complexes.
Mol Cell Proteomics 2013 Jun;12(6):1723-34. Epub 2013 feb 25
PMID: 23438732
Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways.
Neuroimage 2013 Apr 15;70():143-9. Epub 2012 des 27
PMID: 23274185
Substantial loss of conserved and gain of novel ,icroRNA families in flatworms.
Mol Biol Evol 2013 Dec;30(12):2619-28. Epub 2013 sep 11
PMID: 24025793
Transcriptome profiling of the newborn mouse lung after hypoxia and reoxygenation: hyperoxic reoxygenation affects mTOR signaling pathway, DNA repair, and JNK-pathway regulation.
Pediatr Res 2013 Nov;74(5):536-44. Epub 2013 sep 2
PMID: 23999071
Expansion of multipotent stem cells from the adult human brain.
PLoS One 2013;8(8):e71334. Epub 2013 aug 14
PMID: 23967194
New insight into the pathogenesis of retinopathy of prematurity: assessment of whole-genome expression.
Pediatr Res 2013 Apr;73(4 Pt 1):476-83. Epub 2012 des 26
PMID: 23269122
Differential regulation of extracellular matrix constituents in myocardial remodeling with and without heart failure following pressure overload.
Matrix Biol 2013 Mar 11;32(2):133-42. Epub 2012 des 7
PMID: 23220517
The Genomic HyperBrowser: an analysis web server for genome-scale data.
Nucleic Acids Res 2013 Jul;41(Web Server issue):W133-41. Epub 2013 apr 30
PMID: 23632163
Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach.
BMC Genomics 2013;14():482. Epub 2013 jul 17
PMID: 23865519
Treatment outcome of chronic low back pain and radiographic lumbar disc degeneration are associated with inflammatory and matrix degrading gene variants: a prospective genetic association study.
BMC Musculoskelet Disord 2013;14():105. Epub 2013 mar 22
PMID: 23522322
Transient OGG1, APE1, PARP1 and Polß expression in an Alzheimer's disease mouse model.
Mech Ageing Dev 2013 Oct;134(10):467-77. Epub 2013 okt 11
PMID: 24121118
Gene expression profiling in preterm infants: new aspects of bronchopulmonary dysplasia development.
PLoS One 2013;8(10):e78585. Epub 2013 okt 23
PMID: 24194948
CellLineMiner: a knowledge portal for human cell lines.
Bioinformation 2012;8(22):1119-22. Epub 2012 nov 13
PMID: 23251048
[Genome sequencing for personalized cancer treatment].
Tidsskr Nor Laegeforen 2012 Nov;132(21):2406-8.
PMID: 23160594
Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma.
PLoS One 2012;7(11):e48262. Epub 2012 nov 7
PMID: 23144859
Understanding the melanocyte distribution in human epidermis: an agent-based computational model approach.
PLoS One 2012;7(7):e40377. Epub 2012 jul 9
PMID: 22792296
Performance comparison of multiple microarray platforms for gene expression profiling.
Methods Mol Biol 2012;802():141-55.
PMID: 22130879
A primer on the current state of microarray technologies.
Methods Mol Biol 2012;802():3-17.
PMID: 22130870
Transient hyperosmolality modulates expression of cardiac aquaporins.
Biochem Biophys Res Commun 2012 Aug;425(1):70-5. Epub 2012 jul 20
PMID: 22820194
Effect of antiangiogenic therapy on tumor growth, vasculature and kinase activity in basal- and luminal-like breast cancer xenografts.
Mol Oncol 2012 Aug;6(4):418-27. Epub 2012 mar 31
PMID: 22521242
Chemokines regulate small leucine-rich proteoglycans in the extracellular matrix of the pressure-overloaded right ventricle.
J Appl Physiol 2012 Apr;112(8):1372-82. Epub 2012 feb 16
PMID: 22345433
The differential disease regulome.
BMC Genomics 2011;12():353. Epub 2011 jul 7
PMID: 21736759
CLC and IFNAR1 are differentially expressed and a global immunity score is distinct between early- and late-onset colorectal cancer.
Genes Immun 2011 Dec;12(8):653-62. Epub 2011 jun 30
PMID: 21716316
Immunological network signatures of cancer progression and survival.
BMC Med Genomics 2011;4():28. Epub 2011 mar 31
PMID: 21453479
Identifying elemental genomic track types and representing them uniformly.
BMC Bioinformatics 2011 Dec;12(1):494. Epub 2011 des 30
PMID: 22208806
Membranous expression of ectodomain isoforms of the epidermal growth factor receptor predicts outcome after chemoradiotherapy of lymph node-negative cervical cancer.
Clin Cancer Res 2011 Aug;17(16):5501-12. Epub 2011 jul 7
PMID: 21737508
- Ståle Nygård Prosjektdeltaker
- Merete Molton Worren Prosjektdeltaker
- Johannes Eivind Hovig Prosjektleder
- Morten Johansen Prosjektdeltaker
- Vegard Nygaard Prosjektdeltaker
- Daniel Vodak Prosjektdeltaker
- Eivind Hovig Prosjektleder
eRapport er utarbeidet av Sølvi Lerfald og Reidar Thorstensen, Regionalt kompetansesenter for klinisk forskning, Helse Vest RHF, og videreutvikles av de fire RHF-ene i fellesskap, med støtte fra Helse Vest IKT
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