The Norwegian Sequencing Centre (NSC) - a national core facility for high throughput sequencing
- Prosjektnummer
- 2013090
- Ansvarlig person
- Dag Undlien
- Institusjon
- Oslo universitetssykehus HF
- Prosjektkategori
- Regional teknologisk kjernefasilitet
- Helsekategori
- Forskningsaktivitet
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway.
Stand Genomic Sci 2014 Jun 15;9(3):676-86. Epub 2014 mar 1
PMID: 25197453
Arctic root-associated fungal community composition reflects environmental filtering.
Mol Ecol 2014 Feb;23(3):649-59.
PMID: 24320873
Use of ancient sedimentary DNA as a novel conservation tool for high-altitude tropical biodiversity.
Conserv Biol 2014 Apr;28(2):446-55. Epub 2013 des 26
PMID: 24372820
Low host specificity of root-associated fungi at an Arctic site.
Mol Ecol 2014 Feb;23(4):975-85.
PMID: 24382270
Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages.
PLoS Genet 2014 Dec;10(12):e1004776. Epub 2014 des 18
PMID: 25522320
Massive expansion of Ubiquitination-related gene families within the Chlamydiae.
Mol Biol Evol 2014 Nov;31(11):2890-904. Epub 2014 jul 28
PMID: 25069652
Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient.
Genome Biol 2014;15(11):490. Epub 2014 nov 7
PMID: 25418686
Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes.
Nature 2014 Oct 30;514(7524):620-3.
PMID: 25355364
Microbial community structure and dynamics during co-digestion of whey permeate and cow manure in continuous stirred tank reactor systems.
Bioresour Technol 2014 Nov;171():350-9. Epub 2014 aug 30
PMID: 25222739
Comparative genomics of flatworms (platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata.
Genome Biol Evol 2014 May;6(5):1105-17.
PMID: 24732282
Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway.
PLoS One 2014;9(10):e111788. Epub 2014 okt 31
PMID: 25360710
Genome Sequences of Corynebacterium pseudotuberculosis Strains 48252 (Human, Pneumonia), CS_10 (Lab Strain), Ft_2193/67 (Goat, Pus), and CCUG 27541.
Genome Announc 2014;2(5). Epub 2014 sep 4
PMID: 25189581
Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure.
PLoS One 2014;9(1):e85990. Epub 2014 jan 24
PMID: 24475066
Sensitivity to the two-peptide bacteriocin lactococcin G is dependent on UppP, an enzyme involved in cell-wall synthesis.
Mol Microbiol 2014 Jun;92(6):1177-87. Epub 2014 mai 23
PMID: 24779486
Detection of a low-grade enteroviral infection in the islets of langerhans of living patients newly diagnosed with type 1 diabetes.
Diabetes 2015 May;64(5):1682-7. Epub 2014 nov 24
PMID: 25422108
Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans.
Nat Commun 2014;5():3905. Epub 2014 mai 20
PMID: 24844197
Subsarcolemmal lipid droplet responses to a combined endurance and strength exercise intervention.
Physiol Rep 2014 Nov 1;2(11). Epub 2014 nov 20
PMID: 25413318
Estimating the information value of polymorphic sites using pooled sequences.
BMC Genomics 2014 Oct 17;15(Suppl 6):S20. Epub 2014 okt 17
PMID: 25571927
MEAF6/PHF1 is a recurrent gene fusion in endometrial stromal sarcoma.
Cancer Lett 2014 May 28;347(1):75-8. Epub 2014 feb 11
PMID: 24530230
Low frequency of ESRRA-C11orf20 fusion gene in ovarian carcinomas.
PLoS Biol 2014 Feb;12(2):e1001784. Epub 2014 feb 4
PMID: 24504521
A dominant STIM1 mutation causes Stormorken syndrome.
Hum Mutat 2014 May;35(5):556-64. Epub 2014 apr 9
PMID: 24619930
Novel CSF1-S100A10 fusion gene and CSF1 transcript identified by RNA sequencing in tenosynovial giant cell tumors.
Int J Oncol 2014 May;44(5):1425-32. Epub 2014 mar 5
PMID: 24604026
Genome interplay in the grain transcriptome of hexaploid bread wheat.
Science 2014 Jul 18;345(6194):1250091.
PMID: 25035498
Effective variant detection by targeted deep sequencing of DNA pools: an example from Parkinson's disease.
Ann Hum Genet 2014 May;78(3):243-52. Epub 2014 mar 24
PMID: 24660942
Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing.
BMJ Open 2014;4(11):e006278. Epub 2014 nov 4
PMID: 25371418
Identification of copy number variants from exome sequence data.
BMC Genomics 2014;15():661. Epub 2014 aug 7
PMID: 25102989
Genome Sequence of Porphyromonas gingivalis Strain HG66 (DSM 28984).
Genome Announc 2014;2(5). Epub 2014 sep 25
PMID: 25291768
A metagenomic study of the microbial communities in four parallel biogas reactors.
Biotechnol Biofuels 2014;7(1):146. Epub 2014 okt 14
PMID: 25328537
Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells.
Cell Rep 2014 Sep 11;8(5):1432-46. Epub 2014 aug 21
PMID: 25159140
Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA.
PLoS One 2014;9(3):e89676. Epub 2014 mar 7
PMID: 24608104
RNA-sequencing analysis of HepG2 cells treated with atorvastatin.
PLoS One 2014;9(8):e105836. Epub 2014 aug 25
PMID: 25153832
King penguin demography since the last glaciation inferred from genome-wide data.
Proc Biol Sci 2014 Jul 22;281(1787). Epub 2014 jun 11
PMID: 24920481
Metatranscriptomic analysis of arctic peat soil microbiota.
Appl Environ Microbiol 2014 Sep;80(18):5761-72. Epub 2014 jul 11
PMID: 25015892
Placental miR-1301 is dysregulated in early-onset preeclampsia and inversely correlated with maternal circulating leptin.
Placenta 2014 Sep;35(9):709-17. Epub 2014 jul 15
PMID: 25064070
Fifty thousand years of Arctic vegetation and megafaunal diet.
Nature 2014 Feb 6;506(7486):47-51.
PMID: 24499916
Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment.
PLoS One 2014;9(8):e106510. Epub 2014 aug 29
PMID: 25171164
Early divergence, broad distribution, and high diversity of animal chitin synthases.
Genome Biol Evol 2014 Feb;6(2):316-25.
PMID: 24443419
Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.
Mol Ecol 2013 Jan;22(1):87-101. Epub 2012 nov 19
PMID: 23163508
De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data.
Microbes Environ 2013;28(2):211-6. Epub 2013 apr 20
PMID: 23603801
454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes.
PLoS One 2013;8(9):e74371. Epub 2013 sep 12
PMID: 24069303
Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of ethiopian soda lakes.
PLoS One 2013;8(8):e72577. Epub 2013 aug 30
PMID: 24023625
Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection.
PLoS One 2013;8(3):e57543. Epub 2013 mar 5
PMID: 23472090
Unraveling the evolution of the Atlantic cod's (Gadus morhua L.) alternative immune strategy.
PLoS One 2013;8(9):e74004. Epub 2013 sep 3
PMID: 24019946
Ultra-deep pyrosequencing of partial surface protein genes from infectious Salmon Anaemia virus (ISAV) suggest novel mechanisms involved in transition to virulence.
PLoS One 2013;8(11):e81571. Epub 2013 nov 26
PMID: 24303056
Evolution and distribution of saxitoxin biosynthesis in dinoflagellates.
Mar Drugs 2013;11(8):2814-28. Epub 2013 aug 8
PMID: 23966031
Fusion of ZMYND8 and RELA genes in acute erythroid leukemia.
PLoS One 2013;8(5):e63663. Epub 2013 mai 7
PMID: 23667654
Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location.
BMC Microbiol 2013;13():248. Epub 2013 nov 9
PMID: 24206635
Complete Genome Sequence of the Thermophilic and Facultatively Chemolithoautotrophic Sulfate Reducer Archaeoglobus sulfaticallidus Strain PM70-1T.
Genome Announc 2013;1(4). Epub 2013 jul 5
PMID: 23833130
Different bacterial communities in ectomycorrhizae and surrounding soil.
Sci Rep 2013;3():3471. Epub 2013 des 11
PMID: 24326907
Evolutionary acquisition and loss of saxitoxin biosynthesis in dinoflagellates: the second "core" gene, sxtG.
Appl Environ Microbiol 2013 Apr;79(7):2128-36. Epub 2013 jan 18
PMID: 23335767
RNA sequencing identifies fusion of the EWSR1 and YY1 genes in mesothelioma with t(14;22)(q32;q12).
Genes Chromosomes Cancer 2013 Aug;52(8):733-40. Epub 2013 apr 30
PMID: 23630070
Substantial loss of conserved and gain of novel ,icroRNA families in flatworms.
Mol Biol Evol 2013 Dec;30(12):2619-28. Epub 2013 sep 11
PMID: 24025793
A Zn-dependent metallopeptidase is responsible for sensitivity to LsbB, a class II leaderless bacteriocin of Lactococcus lactis subsp. lactis BGMN1-5.
J Bacteriol 2013 Dec;195(24):5614-21. Epub 2013 okt 11
PMID: 24123824
The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer.
Mar Genomics 2013 Dec 21. Epub 2013 des 21
PMID: 24365712
Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data.
J Appl Microbiol 2013 Jan;114(1):141-51. Epub 2012 nov 1
PMID: 23039191
Draft genome sequences of five strains in the genus thauera.
Genome Announc 2013 Jan;1(1). Epub 2013 jan 31
PMID: 23405361
Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains.
Appl Environ Microbiol 2013 Jan;79(2):508-15. Epub 2012 nov 2
PMID: 23124237
Fusion of the ZC3H7B and BCOR genes in endometrial stromal sarcomas carrying an X;22-translocation.
Genes Chromosomes Cancer 2013 Jul;52(7):610-8. Epub 2013 apr 12
PMID: 23580382
Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity.
Cancer Res 2013 Jul 15;73(14):4222-32.
PMID: 23860718
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi.
Ecol Evol 2013 Jun;3(6):1751-64. Epub 2013 mai 8
PMID: 23789083
ITS1 versus ITS2 as DNA metabarcodes for fungi.
Mol Ecol Resour 2013 Mar;13(2):218-24. Epub 2013 jan 25
PMID: 23350562
Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication.
Nucleic Acids Res 2013 Mar 1;41(5):2846-56. Epub 2013 jan 15
PMID: 23325852
From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.
Appl Environ Microbiol 2013 Nov;79(21):6803-12. Epub 2013 aug 30
PMID: 23995927
Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient.
Mol Ecol 2013 Oct;22(19):5040-52. Epub 2013 aug 21
PMID: 23962113
Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.
Vet Immunol Immunopathol 2013 Oct 1;155(4):238-44. Epub 2013 aug 24
PMID: 24021155
Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq.
Genome Res 2013 Mar;23(3):473-85. Epub 2012 des 11
PMID: 23233545
Pathogens in Urine from Female Patient with Overactive Bladder Syndrome Detected by Culture-independent HTS
The Open Microbiology Journal. doi: 10.2174/1874285801408010148
Metagenomics in CO2 Monitoring
Energy Procedia 37, 2013
Livets bok som App
Aftenposten 2013
- Ragnhild Aaløkken Prosjektdeltaker
- Kristine Fjelland Prosjektdeltaker
- Magnus Leithaug Prosjektdeltaker
- Arvind Sundaram Prosjektdeltaker
- Gregor Duncan Gilfillan Prosjektdeltaker
- Robert Lyle Prosjektdeltaker
- Dag Erik Undlien Prosjektleder
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