eRapport

Genome wide imaging genetics on the Betula cognition sample

Prosjekt
Prosjektnummer
911554
Ansvarlig person
Stephanie Le Hellard
Institusjon
Helse Bergen HF
Prosjektkategori
Forskningsprosjekt
Helsekategori
Mental Health
Forskningsaktivitet
1. Underpinning
Rapporter
2014 - sluttrapport
Inter-individual variations in the human healthy brain functions and morphology can be captured with brain imaging. It has been shown, that a large proportion of these inter-individual variance can be attributed to genetic variations. Understanding which genes influence these variations is essential to understand how the brain functions and is shaped, in the normal functioning. Consequently this knowledge will shed light on the dysfunctioning of the brain in mental health disorders such as psychiatric disorders or neurodegenerative disorders. In order to identify these genetic variants it is necessary to obtain brain imaging and genetics information from large population of individuals. Together with our colleagues from the University of Umeå, who collected cognitive information and imaging information from a large sample (the BETULA sample), we collected genome wide genetic information from a sample of 360 individuals. Using these genetic information, we were able to identify genes that are associated with changes in the white fibre tracts measure by Diffusion Tension Imaging. This study was replicated in a Norwegian sample with comparable information. In the last 2-3 years, there has been large progress in understanding how genetic variations influence different brain structures. It has become evident that these genetic effects are very small and require the collection of large samples. Collecting samples big enough can only be achieved by large multi-centre studies. In brain imaging, the major consortium that performs these studies is the ENIGMA consortium. Since we had relevant samples, we were invited to participate in the ENIGMA latest study, which led to the identification of genetic variants associated with the volume of the hippocampus, the putamen and the caudate. We were also invited to participate in a study that identified genes associated with general cognition in the elderly population, led by the CHARGE consortium. In this study, several genetic variants were associated with cognitive ageing , including the involvement of a gene associated with increased risk to develop Alzheimer disease. The results obtained in this project have participated in our general understanding of which genes are implicated in several brain imaging functions: inter-individual variation in white finer tracts properties, inter-individual variation in the volume of several brain structures and inter-individual variation of cognition in the elderly. For the association with fibre tracts we identified the implication of a gene that has been associated with schizophrenia and a gene implicated tin the cortico-thalamic development. These results will hep understanding how these genes can influence the functioning of the healthy brain and also how these genetic variation relate with brain dysfunction. Notably, how the genes that relate to cognitive aging are related with genes implicated in Alzheimer disease. Additional studies are also now being carried as part of the ENIGMA consortium to investigate if the genes that are associated with brain volumes have an effect in several mental health related traits. Similarly, we are also participating now in further studies to identify more genes implicated in the inter-individual variability in white finer tracts.
2013
We aim at identifying genetic variants implicated in normal brain functioning and in brain imaging, by performing genome wide genotyping on the BETULA sample (from Umeå, Sweden). This will contribute to a better understanding of genetic factors in mental health disorders.Brain imaging can be used to measure several physical properties of the brain, like the volumes of different structures, the thickness of the cortex in different part of the brain, the activation of specific brain regions during task or the amount of white matter / gray matter. There are two main type of cells in the brain: the neurons and the glia. The glia has many functions in the brain especially in the maintenance of an healthy brain. One of these functions is to coat the neurons so that the information travels more efficiently between different regions of the brain. Since the glial cells contain more lipids, they appear as the so-called white matter when looking at brain tissue. Measuring the white matter during brain imaging reflects the proportion of glial cells in the brain. Variations in white matter have been associated with many brain related disorders from psychiatric disorders to ageing. Using the BETULA sample in coordination with a Norwegian sample we obtain an overall measure of the white matter for 600 individuals and especially we obtain the information about how much these measures varied between individuals. Using genetic information we were able to identify genetic factors that explain some of these variations in white matter density in the individuals. Several of the genetic variants identified in this study fall into genes that have been implicated in brain development previously. In addition we are testing how much the genes responsible for the coating of the neurons (i.e. myelination) are influencing these measures of white matter. We have also used these samples and genetic information to search for genes that are correlated with performance in cognitive tests involving speed of processing information. We have also looked at the correlation between genetic factors and the activation of the brain during specific memory tests performed during the scanning and we are currently validating these results. In the same samples we have shown that genetic markers implicated in the predisposition to schizophrenia had no effect on white matter measures. All together these data will help understanding the implication of specific genes in these brain related traits and we can now look also at those genetic factors in brain related diseases such as Alzheimer and psychiatric disorders.
2012
We aim at identifying genetic variants implicated in normal brain functioning and in brain imaging, by performing genome wide genotyping on the BETULA sample (from Umeå, Sweden). This will contribute to a better understanding of genetic factors in mental health disorders.The BETULA sample has been extensively genotyped for cognitive traits especially in the domains of memory, speed of processing and attention. It has also been phenotyped for brain imaging traits. During the first years of the project, our collaborators worked on producing phenotype variables that could be used for genetic analyses. In the meantime we performed the genome wide genotyping of the sample. In the last year we have performed the genetic analyses for two traits in this sample: the fiber skeleton (measured by diffusion tensor imaging- DTI) and the symbol substitution. The fiber skeleton measures inter-individual variabilities in the overall properties of fiber tracks in the brain. These fiber tracks are affected in several neurodegenerative diseases and in schizophrenia. The variation in these fiber tracks is thought to affect abilities such as the connectivity between brain region and the speed of communication between these regions. Therefore the project that we have run this year aimed at identifying genetic variants implicated in the inter-individual differences of fiber skeleton in the brain and genetic variants implicated in the variation at test related to speed of processing. We are also testing if genetic variants implicated in these 2 traits are correlated. These data were verified in an additional Norwegian sample. We have produced the data for this study and we are currently working on the manuscript. In addition we have produced data that is currently used by an international consortium (ENIGMA) to look at variants implicated in the caudate, and the putamen structures, which will be presented at the Human Brain Mapping congress in June. We have also produce data to confirm the implication of interesting candidate genes from collaborators in the BETULA sample. The project is well advanced and will produce good quality manuscripts by the end of the year which help identifying genetic variants implicated in brain morphology and functions.
2011
We have collected the phenotypes (brain images) and the genotypes (2 million variants) for 370 individuals. We have performed the quality controls of the datasets and developed new analytical tools. We will carry and interpret the genetic analyses this year.The aim of this project is to identify genetic factors implicated in the organization of the brain and its functioning under memory tasks. This project brings the unique expertise in imaging from the BETULA group in Umeå, Sweden and in large-scale genetic studies from the Einar Martens group for biological psychiatry in Bergen. Although the financing from Helse Vest for this project was paused during the year 2011, during this year the 2 groups have worked independently on collecting their dataset. The Umeå group has collected brain-imaging data for morphometry, white matter tracts and performance during a memory task on the 370 individuals of the study. The Bergen group has collected the genotyping for 2 million genetic variants dispersed genome wide. The main challenges in project with such high dimensions of data are in the analyses of this data. On one hand the phenotypes can comprise millions of variables and on the other hand the genotypes also comprise millions of data points. It is essential first of all to have a very clean dataset and it is therefore important to take the time necessary for high quality check of the data, which is what both groups have been doing in parallel this year on each dataset. In addition, both groups have developed analytical tools to allow high dimension genotype analysis of imaging phenotypes, and gene based genome wide analyses (manuscript in preparation Nyberg et al. and manuscript submitted Christoforou et al.). Both groups have thus worked towards the optimal preparation of the datasets for the genetic analyses that will take place in the beginning of 2012. In 2011, the two groups have met on several occasions to discuss the strategy and the design of the study. Both groups have participated in the “Imaging and Cognition Genetics” meeting held in Os, Hordaland in June. Both groups are also active members of the Centre of Advanced Studies at the Norwegian Academy of Science project led by Ivar Reinvang in this academic year. In the frame of this collaboration, we have also performed analyses of genetic factors implicated in the performance at a visual attention test. The results of these analyses are currently being written for publication. The year 2012 will thus be a key year for this project has we will see the work done in parallel by the 2 groups coming to the realization of the analyses.
2010
The aim of the project is to identify genes involved in brain structure, function and connectivity. A genome wide analysis of a sample of 375 individuals with brain imaging information will be performed. During this year the sample has been recruited and phenotyped and staff to perform the genetic studies has been recruited and trained.Understanding how the brain is shaped, and how the brain regions are connected and how these connections work under specific tasks (face recognition or memory tasks for example) are important to understand how and why these functions become deficient in some diseases like psychiatric disease or decline with age. The heritability of the brain structure and connections is well established and has been supported by several important studies in the last years. Now with the development of genetic tools, we can perform cost and time effective interrogation of genetic variants covering all the genes in the genome (so called genome wide scans). In parallel, the development of effective brain imaging apparatus has made possible to obtain detailed scans from enough individuals so that genetic studies can be performed on these samples. This project brings together the expertise in Brain Imaging from the group of Lars Nyberg, Department of Radiation Sciences, Umeå University; and in Large Scale Genetic Studies from the group of Stéphanie Le Hellard, Department of Clinical Medicine, University of Bergen. Lars Nyberg and Lars Göran Nilsson have worked for several years on a sample of ca.4000 individuals in the Umeå region to study memory and memory aging. This sample is now well recognized as one of the best charcterised sample for study of Human memory. The Bergen group (PI Stéphanie Le Hellard) has now completed their first genome wide scan of a sample characterized for intellectual functions which will lead to several major publications during the year. The first phase of the project has been completed during this year: the 375 individuals have undergone brain imaging in Umeå, the data has been quality controlled and the group in Umeå is now working on defining phenotypes relevant for genetic studies. In Bergen, a postdoc has been recruited at the to perform the genetic experiments, do the quality controls, run the analyses and produce the reports. He started in the group on the 1st of September and has since then worked on getting familiar with the different tools and softwares necessary for these analyses. The blood from the samples will be sent soon for extraction. The genomic micro-array CHIPs to perform the genotyping have been ordered. We are ready to initiate the phase II of the project, which is to run the genotyping and perform and be ready for the analyses. In December a strategy meeting took place in Umeå to establish the strategy for the coming experiments and to get a summary of the sample recruited, establish a time-plan for the blood extraction and the genotyping, and to discuss on phenotypes to be analysed. In addition several members of this project are in the organizing committee for a conference on “Imaging and Cognition Genetics” that will be held in Solstrand, Os, June 16-18th of June, which will bring experts from these fields and should trigger fruitful discussion and open the possibilities of new collaborations.
Vitenskapelige artikler
Thompson Paul M, Stein Jason L, Medland Sarah E, Hibar Derrek P, Vasquez Alejandro Arias, Renteria Miguel E, Toro Roberto, Jahanshad Neda, Schumann Gunter, Franke Barbara, Wright Margaret J, Martin Nicholas G, Agartz Ingrid, Alda Martin, Alhusaini Saud, Almasy Laura, Almeida Jorge, Alpert Kathryn, Andreasen Nancy C, Andreassen Ole A, Apostolova Liana G, Appel Katja, Armstrong Nicola J, Aribisala Benjamin, Bastin Mark E, Bauer Michael, Bearden Carrie E, Bergmann Orjan, Binder Elisabeth B, Blangero John, Bockholt Henry J, Bøen Erlend, Bois Catherine, Boomsma Dorret I, Booth Tom, Bowman Ian J, Bralten Janita, Brouwer Rachel M, Brunner Han G, Brohawn David G, Buckner Randy L, Buitelaar Jan, Bulayeva Kazima, Bustillo Juan R, Calhoun Vince D, Cannon Dara M, Cantor Rita M, Carless Melanie A, Caseras Xavier, Cavalleri Gianpiero L, Chakravarty M Mallar, Chang Kiki D, Ching Christopher R K, Christoforou Andrea, Cichon Sven, Clark Vincent P, Conrod Patricia, Coppola Giovanni, Crespo-Facorro Benedicto, Curran Joanne E, Czisch Michael, Deary Ian J, de Geus Eco J C, den Braber Anouk, Delvecchio Giuseppe, Depondt Chantal, de Haan Lieuwe, de Zubicaray Greig I, Dima Danai, Dimitrova Rali, Djurovic Srdjan, Dong Hongwei, Donohoe Gary, Duggirala Ravindranath, Dyer Thomas D, Ehrlich Stefan, Ekman Carl Johan, Elvsåshagen Torbjørn, Emsell Louise, Erk Susanne, Espeseth Thomas, Fagerness Jesen, Fears Scott, Fedko Iryna, Fernández Guillén, Fisher Simon E, Foroud Tatiana, Fox Peter T, Francks Clyde, Frangou Sophia, Frey Eva Maria, Frodl Thomas, Frouin Vincent, Garavan Hugh, Giddaluru Sudheer, Glahn David C, Godlewska Beata, Goldstein Rita Z, Gollub Randy L, Grabe Hans J, Grimm Oliver, Gruber Oliver, Guadalupe Tulio, Gur Raquel E, Gur Ruben C, Göring Harald H H, Hagenaars Saskia, Hajek Tomas, Hall Geoffrey B, Hall Jeremy, Hardy John, Hartman Catharina A, Hass Johanna, Hatton Sean N, Haukvik Unn K, Hegenscheid Katrin, Heinz Andreas, Hickie Ian B, Ho Beng-Choon, Hoehn David, Hoekstra Pieter J, Hollinshead Marisa, Holmes Avram J, Homuth Georg, Hoogman Martine, Hong L Elliot, Hosten Norbert, Hottenga Jouke-Jan, Hulshoff Pol Hilleke E, Hwang Kristy S, Jack Clifford R, Jenkinson Mark, Johnston Caroline, Jönsson Erik G, Kahn René S, Kasperaviciute Dalia, Kelly Sinead, Kim Sungeun, Kochunov Peter, Koenders Laura, Krämer Bernd, Kwok John B J, Lagopoulos Jim, Laje Gonzalo, Landen Mikael, Landman Bennett A, Lauriello John, Lawrie Stephen M, Lee Phil H, Le Hellard Stephanie, Lemaître Herve, Leonardo Cassandra D, Li Chiang-Shan, Liberg Benny, Liewald David C, Liu Xinmin, Lopez Lorna M, Loth Eva, Lourdusamy Anbarasu, Luciano Michelle, Macciardi Fabio, Machielsen Marise W J, Macqueen Glenda M, Malt Ulrik F, Mandl René, Manoach Dara S, Martinot Jean-Luc, Matarin Mar, Mather Karen A, Mattheisen Manuel, Mattingsdal Morten, Meyer-Lindenberg Andreas, McDonald Colm, McIntosh Andrew M, McMahon Francis J, McMahon Katie L, Meisenzahl Eva, Melle Ingrid, Milaneschi Yuri, Mohnke Sebastian, Montgomery Grant W, Morris Derek W, Moses Eric K, Mueller Bryon A, Muñoz Maniega Susana, Mühleisen Thomas W, Müller-Myhsok Bertram, Mwangi Benson, Nauck Matthias, Nho Kwangsik, Nichols Thomas E, Nilsson Lars-Göran, Nugent Allison C, Nyberg Lars, Olvera Rene L, Oosterlaan Jaap, Ophoff Roel A, Pandolfo Massimo, Papalampropoulou-Tsiridou Melina, Papmeyer Martina, Paus Tomas, Pausova Zdenka, Pearlson Godfrey D, Penninx Brenda W, Peterson Charles P, Pfennig Andrea, Phillips Mary, Pike G Bruce, Poline Jean-Baptiste, Potkin Steven G, Pütz Benno, Ramasamy Adaikalavan, Rasmussen Jerod, Rietschel Marcella, Rijpkema Mark, Risacher Shannon L, Roffman Joshua L, Roiz-Santiañez Roberto, Romanczuk-Seiferth Nina, Rose Emma J, Royle Natalie A, Rujescu Dan, Ryten Mina, Sachdev Perminder S, Salami Alireza, Satterthwaite Theodore D, Savitz Jonathan, Saykin Andrew J, Scanlon Cathy, Schmaal Lianne, Schnack Hugo G, Schork Andrew J, Schulz S Charles, Schür Remmelt, Seidman Larry, Shen Li, Shoemaker Jody M, Simmons Andrew, Sisodiya Sanjay M, Smith Colin, Smoller Jordan W, Soares Jair C, Sponheim Scott R, Sprooten Emma, Starr John M, Steen Vidar M, Strakowski Stephen, Strike Lachlan, Sussmann Jessika, Sämann Philipp G, Teumer Alexander, Toga Arthur W, Tordesillas-Gutierrez Diana, Trabzuni Daniah, Trost Sarah, Turner Jessica, Van den Heuvel Martijn, van der Wee Nic J, van Eijk Kristel, van Erp Theo G M, Van Haren Neeltje E M, van 't Ent Dennis, van Tol Marie-Jose, Valdés Hernández Maria C, Veltman Dick J, Versace Amelia, Völzke Henry, Walker Robert, Walter Henrik, Wang Lei, Wardlaw Joanna M, Weale Michael E, Weiner Michael W, Wen Wei, Westlye Lars T, Whalley Heather C, Whelan Christopher D, White Tonya, Winkler Anderson M, Wittfeld Katharina, Woldehawariat Girma, Wolf Christiane, Zilles David, Zwiers Marcel P, Thalamuthu Anbupalam, Schofield Peter R, Freimer Nelson B, Lawrence Natalia S, Drevets Wayne, Alzheimer’s Disease Neuroimaging Initiative, EPIGEN Consortium, IMAGEN Consortium, Saguenay Youth Study (SYS) Group

The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data.

Brain Imaging Behav 2014 Jun;8(2):153-82.

PMID: 24399358

Fernandes Carla P D, Christoforou Andrea, Giddaluru Sudheer, Ersland Kari M, Djurovic Srdjan, Mattheisen Manuel, Lundervold Astri J, Reinvang Ivar, Nöthen Markus M, Rietschel Marcella, Ophoff Roel A, Genetic Risk and Outcome of Psychosis (GROUP), Hofman Albert, Uitterlinden André G, Werge Thomas, Cichon Sven, Espeseth Thomas, Andreassen Ole A, Steen Vidar M, Le Hellard Stephanie

A genetic deconstruction of neurocognitive traits in schizophrenia and bipolar disorder.

PLoS One 2013;8(12):e81052. Epub 2013 des 12

PMID: 24349030

Christoforou Andrea, Dondrup Michael, Mattingsdal Morten, Mattheisen Manuel, Giddaluru Sudheer, Nöthen Markus M, Rietschel Marcella, Cichon Sven, Djurovic Srdjan, Andreassen Ole A, Jonassen Inge, Steen Vidar M, Puntervoll Pål, Le Hellard Stéphanie

Linkage-disequilibrium-based binning affects the interpretation of GWASs.

Am J Hum Genet 2012 Apr;90(4):727-33. Epub 2012 mar 22

PMID: 22444669

Salami Alireza, Eriksson Johan, Nyberg Lars

Opposing effects of aging on large-scale brain systems for memory encoding and cognitive control.

J Neurosci 2012 Aug;32(31):10749-57.

PMID: 22855822

Davies G, Tenesa A, Payton A, Yang J, Harris S E, Liewald D, Ke X, Le Hellard S, Christoforou A, Luciano M, McGhee K, Lopez L, Gow A J, Corley J, Redmond P, Fox H C, Haggarty P, Whalley L J, McNeill G, Goddard M E, Espeseth T, Lundervold A J, Reinvang I, Pickles A, Steen V M, Ollier W, Porteous D J, Horan M, Starr J M, Pendleton N, Visscher P M, Deary I J

Genome-wide association studies establish that human intelligence is highly heritable and polygenic.

Mol Psychiatry 2011 Oct;16(10):996-1005. Epub 2011 aug 9

PMID: 21826061

Kauppi Karolina, Nilsson Lars-Göran, Adolfsson Rolf, Eriksson Elias, Nyberg Lars

KIBRA polymorphism is related to enhanced memory and elevated hippocampal processing.

J Neurosci 2011 Oct;31(40):14218-22.

PMID: 21976506

Nyberg Lars, Salami Alireza, Andersson Mikael, Eriksson Johan, Kalpouzos Grégoria, Kauppi Karolina, Lind Johanna, Pudas Sara, Persson Jonas, Nilsson Lars-Göran

Longitudinal evidence for diminished frontal cortex function in aging.

Proc Natl Acad Sci U S A 2010 Dec;107(52):22682-6. Epub 2010 des 14

PMID: 21156826

Persson Jonas, Kalpouzos Grégoria, Nilsson Lars-Göran, Ryberg Mats, Nyberg Lars

Preserved hippocampus activation in normal aging as revealed by fMRI.

Hippocampus 2010 May. Epub 2010 mai 17

PMID: 20865729

Hibar, Derek et al.

Common genetic variants influence human subcortical brain structures

Nature. 2015 Jan 21. doi: 10.1038/nature14101. [Epub ahead of print]

Davies, G. et al.

Genetic contributions to variation in general cognitive function: a meta-analysis of GWAS in the CHARGE

Molecular Psychiatry, publication date 3rd February 2015

Giddaluru, S et al.

Genetics of Structural Connectivity and Information processing in the Brain

Article resubmitted to journal of Neurosciences

Deltagere
  • Lars Nyberg Prosjektdeltaker
  • Sudheer Giddaluru Postdoktor
  • Stephanie Le Hellard Prosjektleder
  • Lars Göran Nilsson Prosjektdeltaker
  • Vidar Martin Steen Prosjektdeltaker

eRapport er utarbeidet av Sølvi Lerfald og Reidar Thorstensen, Regionalt kompetansesenter for klinisk forskning, Helse Vest RHF, og videreutvikles av de fire RHF-ene i fellesskap, med støtte fra Helse Vest IKT

Alle henvendelser rettes til Faglig rapportering, Helse Vest

Personvern  -  Informasjonskapsler